C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107443 Krt40-002 ENSMUSG00000059169 10090 - 11:99537485-99543158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastOvaryTestisENSMUST00000107443
Transcript ID Bladder Breast Ovary Testis
ENSMUST00000107443 0.008±0.00 0.034±0.00 0.108±0.00 0.095±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_001A CGP 11:99514114-99543158
CIL_0004QI CIL_0004QI_0002 CGP 11:99537485-99550865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225550 KRT37-001 protein_coding Homo_sapiens 3e-35 154
ENST00000225899 KRT32-001 protein_coding Homo_sapiens 0 244
ENST00000246639 KRT35-001 protein_coding Homo_sapiens 0 300
ENST00000246646 KRT38-001 protein_coding Homo_sapiens 2e-18 99
ENST00000251645 KRT31-001 protein_coding Homo_sapiens 0 243
ENST00000355612 KRT39-001 protein_coding Homo_sapiens 0.00000005 64
ENST00000393988 KRT41P-001 unprocessed_pseudogene Homo_sapiens 5.99994e-41 172
ENST00000393989 KRT35-201 protein_coding Homo_sapiens 0 300
ENST00000394001 KRT34-001 protein_coding Homo_sapiens 0 305
ENST00000571312 RP1-18F17.1-001 protein_coding Homo_sapiens 0 305
ENST00000572799 AC003958.1-001 unprocessed_pseudogene Homo_sapiens 5.99994e-41 172
ENST00000573281 KRT31-001 protein_coding Homo_sapiens 0 243
ENST00000574588 KRT37-001 protein_coding Homo_sapiens 3e-35 154
ENST00000575391 KRT39-001 protein_coding Homo_sapiens 0.00000005 64
ENST00000576522 AC004231.7-001 protein_coding Homo_sapiens 0 311
ENST00000578078 KRT39-003 nonsense_mediated_decay Homo_sapiens 0.00000005 64
ENST00000580328 KRT39-003 nonsense_mediated_decay Homo_sapiens 0.00000005 64

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