C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HOP homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059325 Hopx 10090 - 5:77086988-77115121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081964 Hopx-001 77086988-77115121 protein_coding
  ENSMUST00000113453 Hopx-002 77086988-77095277 protein_coding
  ENSMUST00000120827 Hopx-003 77086988-77095253 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081964ENSMUST00000113453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081964 2.311±0.18 N/A 30.382±11.29 1.629±0.37 0.768±0.00 9.727±2.25 81.998±13.77 N/A 0.103±0.01 244.666±73.73 N/A 2.620±0.87 1.252±0.18 N/A
ENSMUST00000113453 2.195±1.16 0.687±0.22 5.357±0.00 4.205±1.31 4.357±1.36 N/A 15.257±2.98 3.300±0.49 8.046±5.61 N/A 1.456±0.42 2.514±1.43 7.540±5.12 3.013±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0001WR CIL_0001WR_0002 CGP 5:77016023-77115121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001829 IMP trophectodermal cell differentiation
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0008016 IMP regulation of heart contraction
GO:0016575 IGI histone deacetylation
GO:0043393 IDA regulation of protein binding
GO:0043415 IMP positive regulation of skeletal muscle tissue regeneration
GO:0045596 IEA negative regulation of cell differentiation
GO:0048286 IMP lung alveolus development
GO:0051155 IMP positive regulation of striated muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089368 hopx HOP homeobox protein_coding Danio_rerio
ENSG00000171476 HOPX HOP homeobox protein_coding Homo_sapiens

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