C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HOP homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081964 Hopx-001 ENSMUSG00000059325 10090 - 5:77086988-77115121 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaENSMUST00000081964
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta
ENSMUST00000081964 2.311±0.18 30.382±11.29 1.629±0.37 0.768±0.00 9.727±2.25 81.998±13.77 0.103±0.01 244.666±73.73 2.620±0.87 1.252±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0001WR CIL_0001WR_0002 CGP 5:77016023-77115121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001829 IMP trophectodermal cell differentiation
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0008016 IMP regulation of heart contraction
GO:0016575 IGI histone deacetylation
GO:0043393 IDA regulation of protein binding
GO:0043415 IMP positive regulation of skeletal muscle tissue regeneration
GO:0045596 IEA negative regulation of cell differentiation
GO:0048286 IMP lung alveolus development
GO:0051155 IMP positive regulation of striated muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337881 HOPX-003 protein_coding Homo_sapiens 0 545
ENST00000420433 HOPX-014 protein_coding Homo_sapiens 0 206
ENST00000554144 HOPX-201 protein_coding Homo_sapiens 0 206

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