C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor A (SII), 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059540 Tcea2 10090 + 2:181680310-181688071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103042 Tcea2-001 181680310-181688071 protein_coding
  ENSMUST00000125892 Tcea2-006 181683601-181686934 retained_intron
  ENSMUST00000126623 Tcea2-005 181683166-181686292 processed_transcript
  ENSMUST00000126844 Tcea2-008 181687516-181688062 processed_transcript
  ENSMUST00000129006 Tcea2-004 181682885-181688045 protein_coding
  ENSMUST00000129686 Tcea2-002 181680310-181687347 retained_intron
  ENSMUST00000129745 Tcea2-003 181681190-181688051 protein_coding
  ENSMUST00000136145 Tcea2-007 181683575-181687911 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103042ENSMUST00000125892ENSMUST00000126623ENSMUST00000126844ENSMUST00000129006ENSMUST00000129686ENSMUST00000129745ENSMUST00000136145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103042 2.959±1.18 1.378±0.25 7.151±1.22 13.471±0.53 1.261±0.15 0.856±0.26 1.975±0.29 1.990±0.36 0.901±0.47 1.810±0.19 1.881±0.65 3.650±0.89 0.812±0.44 247.280±52.65
ENSMUST00000125892 N/A N/A N/A 7.008±0.00 N/A N/A N/A N/A N/A N/A N/A 2.171±0.00 0.307±0.06 N/A
ENSMUST00000126623 N/A N/A N/A N/A N/A N/A N/A N/A 0.412±0.00 N/A N/A N/A N/A N/A
ENSMUST00000126844 N/A 7.176±0.00 N/A N/A N/A N/A N/A N/A 1.212±0.00 N/A N/A N/A N/A N/A
ENSMUST00000129006 0.982±0.00 N/A N/A N/A N/A N/A 1.016±0.00 1.386±0.01 0.620±0.00 1.340±0.06 N/A 3.744±0.79 N/A N/A
ENSMUST00000129686 1.539±0.62 0.530±0.01 1.711±0.05 4.676±1.53 0.693±0.10 0.477±0.09 0.466±0.00 0.593±0.07 0.189±0.13 1.852±0.18 0.367±0.00 1.168±0.27 0.245±0.16 N/A
ENSMUST00000129745 2.335±0.99 N/A N/A N/A 2.103±0.36 N/A N/A 1.435±0.26 0.228±0.00 2.494±0.00 0.960±0.00 3.052±0.15 0.412±0.00 N/A
ENSMUST00000136145 1.385±0.00 2.049±0.81 2.292±0.00 5.083±1.85 N/A 1.340±0.07 0.889±0.00 1.098±0.00 0.751±0.30 1.629±0.04 0.771±0.10 6.338±1.81 0.505±0.12 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V3 CIL_0003V3_0002 CGP 2:181669836-181688071
CIL_0007I6 CIL_0007I6_0002 CGP 2:181680310-181693977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005813 IEA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012927 tcea2 transcription elongation factor A (SII), 2 protein_coding Danio_rerio
ENSG00000171703 TCEA2 transcription elongation factor A (SII), 2 protein_coding Homo_sapiens

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