C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinitis pigmentosa 2 homolog (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060090 Rp2h 10090 + X:20364481-20405653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033372 Rp2h-001 20364481-20400853 protein_coding
  ENSMUST00000115387 Rp2h-002 20364559-20400853 protein_coding
  ENSMUST00000115391 Rp2h-003 20364481-20400857 protein_coding
  ENSMUST00000133619 Rp2h-004 20364619-20405630 nonsense_mediated_decay
  ENSMUST00000134349 Rp2h-005 20364575-20405653 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033372ENSMUST00000115387ENSMUST00000115391ENSMUST00000134349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033372 1.268±0.69 0.672±0.00 4.153±0.36 1.507±1.00 1.308±0.60 1.382±0.52 0.746±0.12 0.999±0.29 2.610±1.70 1.557±0.16 0.678±0.21 1.713±1.25 2.286±0.95 N/A
ENSMUST00000115387 0.690±0.00 N/A N/A N/A 0.342±0.00 N/A N/A 0.613±0.00 0.653±0.09 1.126±0.27 0.164±0.01 0.647±0.00 N/A N/A
ENSMUST00000115391 3.325±0.95 7.865±1.41 3.465±0.05 1.140±0.00 4.366±1.37 7.756±1.82 1.574±0.41 3.859±0.40 2.121±0.66 6.555±1.11 0.682±0.17 4.516±1.89 3.484±1.03 17.345±3.38
ENSMUST00000134349 0.532±0.00 N/A N/A N/A N/A 1.740±0.00 N/A N/A N/A N/A N/A 5.325±0.00 N/A 4.300±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G6 CIL_0005G6_0002 CGP X:20105755-20405653
CIL_0005G5 CIL_0005G5_0002 CGP X:20364481-20519939

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003779 IEA actin binding
GO:0004550 IEA nucleoside diphosphate kinase activity
GO:0005096 ISS GTPase activator activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005814 IDA centriole
GO:0005886 ISS plasma membrane
GO:0006165 IEA nucleoside diphosphate phosphorylation
GO:0006183 IEA GTP biosynthetic process
GO:0006228 IEA UTP biosynthetic process
GO:0006241 IEA CTP biosynthetic process
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007010 IEA cytoskeleton organization
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0036064 IDA ciliary basal body
GO:0043547 ISS positive regulation of GTPase activity
GO:0070062 IEA extracellular vesicular exosome
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044339 rp2 retinitis pigmentosa 2 (X-linked recessive) protein_coding Danio_rerio
ENSG00000102218 RP2 retinitis pigmentosa 2 (X-linked recessive) protein_coding Homo_sapiens

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