C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa 2 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134349 Rp2h-005 ENSMUSG00000060090 10090 + X:20364575-20405653 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonOvaryTestisENSMUST00000134349
Transcript ID Adipose Colon Ovary Testis
ENSMUST00000134349 0.532±0.00 1.740±0.00 5.325±0.00 4.300±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G6 CIL_0005G6_0002 CGP X:20105755-20405653
CIL_0005G5 CIL_0005G5_0002 CGP X:20364481-20519939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003779 IEA actin binding
GO:0004550 IEA nucleoside diphosphate kinase activity
GO:0005096 ISS GTPase activator activity
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005814 IDA centriole
GO:0005886 ISS plasma membrane
GO:0006165 IEA nucleoside diphosphate phosphorylation
GO:0006183 IEA GTP biosynthetic process
GO:0006228 IEA UTP biosynthetic process
GO:0006241 IEA CTP biosynthetic process
GO:0007010 IEA cytoskeleton organization
GO:0015031 IEA protein transport
GO:0036064 IDA ciliary basal body
GO:0043547 ISS positive regulation of GTPase activity
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218340 RP2-001 protein_coding Homo_sapiens 0 1042

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