C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa 2 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033372 Rp2h-001 ENSMUSG00000060090 10090 + X:20364481-20400853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000033372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000033372 1.268±0.69 0.672±0.00 4.153±0.36 1.507±1.00 1.308±0.60 1.382±0.52 0.746±0.12 0.999±0.29 2.610±1.70 1.557±0.16 0.678±0.21 1.713±1.25 2.286±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G6 CIL_0005G6_0002 CGP X:20105755-20405653
CIL_0005G5 CIL_0005G5_0002 CGP X:20364481-20519939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003779 IEA actin binding
GO:0004550 IEA nucleoside diphosphate kinase activity
GO:0005096 ISS GTPase activator activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005814 IDA centriole
GO:0005886 ISS plasma membrane
GO:0006165 IEA nucleoside diphosphate phosphorylation
GO:0006183 IEA GTP biosynthetic process
GO:0006228 IEA UTP biosynthetic process
GO:0006241 IEA CTP biosynthetic process
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007010 IEA cytoskeleton organization
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0036064 IDA ciliary basal body
GO:0043547 ISS positive regulation of GTPase activity
GO:0070062 IEA extracellular vesicular exosome
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218340 RP2-001 protein_coding Homo_sapiens 0 1325

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