C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005G5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102218-ENSG00000102221 CGP 9606 X:46836940-47061242
GeneTranscriptPositionBiotype
ENSG00000102218 (RP2)
retinitis pigmentosa 2 (X-linked recessive) 		ENST00000218340 (RP2-001) 46836940-46882358 protein_coding
ENSG00000102221 (JADE3)
jade family PHD finger 3 		ENST00000424392 (JADE3-002) 46912276-47027976 protein_coding
ENST00000455411 (JADE3-003) 46912796-47024783 protein_coding
ENST00000611250 (JADE3-201) 46912276-47061242 protein_coding
ENST00000614628 (JADE3-001) 46912433-47061241 protein_coding
ENSG00000204904 (CXorf31)
long intergenic non-protein coding RNA 1545 		ENST00000377879 (CXorf31-001) 46887417-46899703 lincRNA
ENST00000618037 (CXorf31-201) 46887421-46894592 lincRNA
CIL_0005G5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060090-ENSMUSG00000037315 CGP 10090 X:20364481-20519939
GeneTranscriptPositionBiotype
ENSMUSG00000037315 (Jade3)
jade family PHD finger 3 		ENSMUST00000043693 (Jade3-201) 20460527-20517896 protein_coding
ENSMUST00000115384 (Jade3-001) 20425688-20519939 protein_coding
ENSMUST00000136093 (Jade3-002) 20425788-20494586 retained_intron
ENSMUSG00000060090 (Rp2h)
retinitis pigmentosa 2 homolog (human) 		ENSMUST00000033372 (Rp2h-001) 20364481-20400853 protein_coding
ENSMUST00000115387 (Rp2h-002) 20364559-20400853 protein_coding
ENSMUST00000115391 (Rp2h-003) 20364481-20400857 protein_coding
ENSMUST00000133619 (Rp2h-004) 20364619-20405630 nonsense_mediated_decay
ENSMUST00000134349 (Rp2h-005) 20364575-20405653 nonsense_mediated_decay
ENSMUSG00000081529 (Gm14884)
predicted gene 14884 		ENSMUST00000120456 (Gm14884-001) 20459490-20459685 processed_pseudogene
ENSMUSG00000082855 (Gm14537)
predicted gene 14537 		ENSMUST00000117464 (Gm14537-001) 20391709-20392501 processed_pseudogene
ENSMUSG00000084137 (Gm9085)
predicted gene 9085 		ENSMUST00000119994 (Gm9085-001) 20382750-20383821 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005G5_0001ENSG00000102218ENST00000218340ENSG00000102221ENST00000424392ENST00000455411ENST00000611250ENST00000614628ENSG00000204904ENST00000377879ENST00000618037CIL_0005G5_0002ENSMUSG00000037315ENSMUST00000043693ENSMUST00000115384ENSMUST00000136093ENSMUSG00000060090ENSMUST00000033372ENSMUST00000115387ENSMUST00000115391ENSMUST00000133619ENSMUST00000134349ENSMUSG00000081529ENSMUST00000120456ENSMUSG00000082855ENSMUST00000117464ENSMUSG00000084137ENSMUST00000119994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005G5_0001ENSG00000102218ENST00000218340ENSG00000102221ENST00000424392ENST00000611250ENST00000614628ENSG00000204904ENST00000377879ENST00000618037CIL_0005G5_0002ENSMUSG00000037315ENSMUST00000043693ENSMUST00000115384ENSMUST00000136093ENSMUSG00000060090ENSMUST00000033372ENSMUST00000115387ENSMUST00000115391ENSMUST00000134349ENSMUSG00000081529ENSMUST00000120456ENSMUSG00000082855ENSMUST00000117464ENSMUSG00000084137ENSMUST00000119994
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102218 ENST00000218340 3.997±0.00 3.309±0.00 0.551±0.00 0.711±0.29 2.548±0.60 2.384±0.16 0.865±0.53 2.787±0.39 1.785±0.01 2.045±1.00 0.249±0.23 2.808±0.59 8.080±1.83 2.303±0.72
ENSG00000102221 ENST00000424392 N/A N/A N/A 0.409±0.00 N/A N/A N/A N/A 2.088±0.00 N/A N/A N/A N/A 7.093±0.00
ENST00000455411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611250 N/A 1.212±0.00 0.231±0.00 0.279±0.00 1.383±0.00 0.323±0.00 N/A 0.999±0.43 0.617±0.40 1.487±0.00 0.684±0.00 2.371±0.00 4.385±0.00 4.242±0.55
ENST00000614628 2.199±0.00 1.819±0.00 0.155±0.00 1.420±0.00 1.967±0.00 1.707±1.33 1.035±0.66 1.779±0.00 0.734±0.54 0.582±0.05 0.249±0.00 2.241±0.84 3.821±2.33 2.625±1.03
ENSG00000204904 ENST00000377879 0.312±0.00 0.166±0.00 N/A 0.028±0.00 N/A 0.076±0.00 0.321±0.00 0.680±0.00 N/A N/A N/A 0.496±0.45 N/A 0.631±0.29
ENST00000618037 N/A N/A N/A N/A 0.097±0.00 N/A 0.431±0.10 0.318±0.00 N/A N/A N/A 0.311±0.15 0.400±0.31 0.116±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037315 ENSMUST00000043693 0.214±0.00 N/A N/A 1.427±0.00 0.375±0.26 0.330±0.13 N/A 0.151±0.00 N/A 0.356±0.12 0.024±0.00 0.901±0.48 20.271±6.38 1.837±0.00
ENSMUST00000115384 0.534±0.19 0.348±0.11 2.878±0.45 1.325±0.70 0.287±0.14 0.350±0.26 0.211±0.04 0.439±0.10 1.278±1.20 0.919±0.11 0.077±0.03 1.573±1.37 31.573±2.79 1.857±0.76
ENSMUST00000136093 N/A 0.333±0.03 N/A 0.639±0.00 0.184±0.00 N/A N/A N/A 0.406±0.07 N/A 0.060±0.00 1.616±0.99 28.236±0.00 2.199±0.00
ENSMUSG00000060090 ENSMUST00000033372 1.268±0.69 0.672±0.00 4.153±0.36 1.507±1.00 1.308±0.60 1.382±0.52 0.746±0.12 0.999±0.29 2.610±1.70 1.557±0.16 0.678±0.21 1.713±1.25 2.286±0.95 N/A
ENSMUST00000115387 0.690±0.00 N/A N/A N/A 0.342±0.00 N/A N/A 0.613±0.00 0.653±0.09 1.126±0.27 0.164±0.01 0.647±0.00 N/A N/A
ENSMUST00000115391 3.325±0.95 7.865±1.41 3.465±0.05 1.140±0.00 4.366±1.37 7.756±1.82 1.574±0.41 3.859±0.40 2.121±0.66 6.555±1.11 0.682±0.17 4.516±1.89 3.484±1.03 17.345±3.38
ENSMUST00000133619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134349 0.532±0.00 N/A N/A N/A N/A 1.740±0.00 N/A N/A N/A N/A N/A 5.325±0.00 N/A 4.300±0.26
ENSMUSG00000081529 ENSMUST00000120456 N/A N/A N/A 0.396±0.00 5.213±0.00 N/A 1.785±0.03 N/A 1.726±0.94 N/A N/A N/A 1.546±0.20 2.765±0.00
ENSMUSG00000082855 ENSMUST00000117464 0.087±0.00 0.340±0.02 0.073±0.03 0.157±0.07 N/A N/A N/A 0.093±0.00 0.112±0.04 N/A N/A 0.177±0.12 0.227±0.15 0.312±0.22
ENSMUSG00000084137 ENSMUST00000119994 0.051±0.02 N/A 0.020±0.00 0.108±0.05 0.187±0.05 0.151±0.05 0.131±0.00 0.060±0.02 0.048±0.03 0.170±0.06 N/A 0.185±0.01 0.117±0.05 0.292±0.17

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