C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081134 Sycp2-001 ENSMUSG00000060445 10090 - 2:178345293-178407685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081134
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081134 0.048±0.00 0.075±0.00 0.006±0.00 0.048±0.02 0.073±0.00 0.025±0.00 0.025±0.02 0.021±0.01 0.040±0.01 0.016±0.01 0.024±0.00 0.130±0.00 3.675±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SC CIL_0001SC_0002 CGP 2:178118975-178407685

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007140 IMP male meiosis
GO:0007143 IMP female meiotic division
GO:0009566 IMP fertilization
GO:0009887 IMP organ morphogenesis
GO:0043066 IMP negative regulation of apoptotic process
GO:0046982 IPI protein heterodimerization activity
GO:0048808 IMP male genitalia morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357552 SYCP2-001 protein_coding Homo_sapiens 0 2625
ENST00000371001 SYCP2-201 protein_coding Homo_sapiens 0 2625
ENST00000425931 SYCP2-003 protein_coding Homo_sapiens 0 370
ENST00000446834 SYCP2-002 protein_coding Homo_sapiens 0 2122
ENST00000461538 SYCP2-006 retained_intron Homo_sapiens 0 392
ENST00000471331 SYCP2-005 processed_transcript Homo_sapiens 0 562
ENST00000476314 SYCP2-004 processed_transcript Homo_sapiens 0 403

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