C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060961 Slc4a4 10090 + 5:88886818-89239653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113216 Slc4a4-004 89028077-89042362 protein_coding
  ENSMUST00000113218 Slc4a4-007 88887297-89234867 protein_coding
  ENSMUST00000130041 Slc4a4-003 89027966-89234861 protein_coding
  ENSMUST00000134303 Slc4a4-008 89028092-89122453 protein_coding
  ENSMUST00000135283 Slc4a4-005 88887261-88888286 processed_transcript
  ENSMUST00000144713 Slc4a4-006 88934532-88954947 protein_coding
  ENSMUST00000148750 Slc4a4-001 88886818-89239653 protein_coding
  ENSMUST00000156238 Slc4a4-002 88887299-89235794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113218ENSMUST00000130041ENSMUST00000148750ENSMUST00000156238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113218 N/A N/A N/A N/A N/A N/A 1.197±0.00 N/A N/A N/A N/A N/A N/A 0.174±0.09
ENSMUST00000130041 N/A N/A N/A N/A N/A N/A N/A 22.830±0.00 N/A N/A N/A N/A N/A 0.084±0.02
ENSMUST00000148750 1.648±0.36 2.087±0.59 0.786±0.06 3.313±1.10 1.763±0.57 8.037±1.66 1.171±0.37 85.464±7.52 5.449±4.86 1.591±0.47 1.016±0.37 2.530±0.86 1.427±1.24 N/A
ENSMUST00000156238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D8 CIL_0000D8_0002 CGP 5:88764996-89239653
CIL_0000D9 CIL_0000D9_0002 CGP 5:88886818-89457898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006814 IDA sodium ion transport
GO:0006885 TAS regulation of pH
GO:0008510 ISS sodium:bicarbonate symporter activity
GO:0015701 IGI bicarbonate transport
GO:0016323 ISS basolateral plasma membrane
GO:0035725 ISS sodium ion transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013730 slc4a4a solute carrier family 4, member 4a protein_coding Danio_rerio
ENSDARG00000044808 slc4a4b solute carrier family 4, sodium bicarbonate cotransporter, member 4b protein_coding Danio_rerio
ENSG00000080493 SLC4A4 solute carrier family 4 (sodium bicarbonate cotransporter), member 4 protein_coding Homo_sapiens

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