C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small integral membrane protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147148 Smim20-002 ENSMUSG00000061461 10090 + 5:53267178-53278539 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000147148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000147148 20.970±4.74 7.982±1.17 22.021±2.50 10.852±1.87 23.688±11.35 10.691±1.91 40.920±11.33 30.087±6.19 12.377±1.79 10.474±2.96 31.147±5.60 14.850±3.16 16.031±3.24 3.563±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079P CIL_00079P_0002 CGP 5:53107084-53283510
CIL_000343 CIL_000343_0003 CGP 5:53267106-53657445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000506197 SMIM20-001 protein_coding Homo_sapiens 3e-32 143
ENST00000514384 SMIM20-002 protein_coding Homo_sapiens 3e-32 143
ENST00000515764 SMIM20-003 processed_transcript Homo_sapiens 1e-26 124
ENST00000522137 SMIM20-004 processed_transcript Homo_sapiens 6e-27 124
ENST00000614775 SMIM20-201 protein_coding Homo_sapiens 4e-32 143

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