C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small integral membrane protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121042 Smim20-001 ENSMUSG00000061461 10090 + 5:53267106-53283510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121042
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121042 1.794±0.45 7.305±1.87 1.894±0.13 2.079±0.45 2.639±0.93 4.376±0.70 3.273±0.18 3.132±0.57 1.239±0.55 2.497±0.43 1.787±0.23 2.384±0.95 0.516±0.29 0.204±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079P CIL_00079P_0002 CGP 5:53107084-53283510
CIL_000343 CIL_000343_0003 CGP 5:53267106-53657445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000412480 PDE4B-014 protein_coding Homo_sapiens 0.00004 53
ENST00000506197 SMIM20-001 protein_coding Homo_sapiens 0 261
ENST00000514384 SMIM20-002 protein_coding Homo_sapiens 3e-32 143
ENST00000515764 SMIM20-003 processed_transcript Homo_sapiens 4e-26 122
ENST00000522137 SMIM20-004 processed_transcript Homo_sapiens 2e-26 122
ENST00000600519 FAM129C-007 nonsense_mediated_decay Homo_sapiens 0.00009 55
ENST00000614775 SMIM20-201 protein_coding Homo_sapiens 0 261

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