C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080356 Snrpa-001 ENSMUSG00000061479 10090 - 7:27187007-27196271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080356 34.994±7.17 57.297±9.38 31.821±2.50 35.636±23.48 44.035±7.17 42.639±6.81 19.531±3.57 33.919±3.91 26.780±9.42 35.900±2.85 7.430±1.04 63.395±26.30 28.022±14.66 27.639±7.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZN CIL_0002ZN_0002 CGP 7:27187005-27205386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005681 ISS spliceosomal complex
GO:0005685 ISS U1 snRNP
GO:0017069 IEA snRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243563 SNRPA-001 protein_coding Homo_sapiens 0 1181
ENST00000596860 SNRPA-012 retained_intron Homo_sapiens 0 335
ENST00000597353 SNRPA-011 protein_coding Homo_sapiens 0 531
ENST00000598452 SNRPA-004 retained_intron Homo_sapiens 0 405
ENST00000598923 SNRPA-010 retained_intron Homo_sapiens 0 710
ENST00000599362 SNRPA-009 protein_coding Homo_sapiens 0 514
ENST00000600456 SNRPA-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000601253 SNRPA-008 protein_coding Homo_sapiens 0 436
ENST00000601393 SNRPA-006 protein_coding Homo_sapiens 0 660
ENST00000601545 SNRPA-003 protein_coding Homo_sapiens 0 749

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