C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126211 Snrpa-003 ENSMUSG00000061479 10090 - 7:27187327-27195760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000126211
Transcript ID Adipose Bladder Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000126211 16.565±0.62 18.492±0.00 36.273±31.35 12.929±1.32 17.981±0.00 22.035±14.48 4.581±0.00 70.462±46.44 13.043±4.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZN CIL_0002ZN_0002 CGP 7:27187005-27205386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0017069 IEA snRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243563 SNRPA-001 protein_coding Homo_sapiens 0 894
ENST00000597353 SNRPA-011 protein_coding Homo_sapiens 0 531
ENST00000598452 SNRPA-004 retained_intron Homo_sapiens 0 405
ENST00000598923 SNRPA-010 retained_intron Homo_sapiens 0 715
ENST00000599362 SNRPA-009 protein_coding Homo_sapiens 0 514
ENST00000600456 SNRPA-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000601253 SNRPA-008 protein_coding Homo_sapiens 0 436
ENST00000601393 SNRPA-006 protein_coding Homo_sapiens 0 285
ENST00000601545 SNRPA-003 protein_coding Homo_sapiens 0 749

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