C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061613 U2af1 10090 - 17:31647082-31658754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014684 U2af1-201 31647082-31658754 protein_coding
  ENSMUST00000166526 U2af1-202 31647082-31658754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014684ENSMUST00000166526
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014684 18.655±4.86 3.714±0.70 55.130±5.70 46.991±13.93 9.344±3.00 9.762±2.69 10.858±1.09 20.988±3.90 56.807±43.72 11.423±1.13 23.149±2.18 26.385±23.25 81.475±27.52 12.762±4.73
ENSMUST00000166526 N/A N/A 9.667±1.14 16.444±0.00 N/A N/A 3.718±0.60 3.603±0.07 23.686±4.84 N/A 3.227±0.53 8.168±3.16 21.541±8.64 6.732±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0000MQ CIL_0000MQ_0004 CGP 17:31612623-31658754
CIL_0000P2 CIL_0000P2_0002 CGP 17:31647082-31681722

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0050733 IPI RS domain binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015325 u2af1 U2(RNU2) small nuclear RNA auxiliary factor 1 protein_coding Danio_rerio
ENSG00000160201 U2AF1 U2 small nuclear RNA auxiliary factor 1 protein_coding Homo_sapiens

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