C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014684 U2af1-201 ENSMUSG00000061613 10090 - 17:31647082-31658754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014684 18.655±4.86 3.714±0.70 55.130±5.70 46.991±13.93 9.344±3.00 9.762±2.69 10.858±1.09 20.988±3.90 56.807±43.72 11.423±1.13 23.149±2.18 26.385±23.25 81.475±27.52 12.762±4.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0000MQ CIL_0000MQ_0004 CGP 17:31612623-31658754
CIL_0000P2 CIL_0000P2_0002 CGP 17:31647082-31681722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0050733 IPI RS domain binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291552 U2AF1-001 protein_coding Homo_sapiens 0 1038
ENST00000380276 U2AF1-002 protein_coding Homo_sapiens 0 917
ENST00000398137 U2AF1-201 protein_coding Homo_sapiens 0 841
ENST00000459639 U2AF1-004 protein_coding Homo_sapiens 0 977
ENST00000463599 U2AF1-009 retained_intron Homo_sapiens 1.4013e-45 185
ENST00000464750 U2AF1-003 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000468039 U2AF1-011 retained_intron Homo_sapiens 8e-27 124
ENST00000471250 U2AF1-008 retained_intron Homo_sapiens 0 534
ENST00000475639 U2AF1-005 retained_intron Homo_sapiens 0 846
ENST00000478282 U2AF1-007 retained_intron Homo_sapiens 0 287
ENST00000486519 U2AF1-010 processed_transcript Homo_sapiens 0 612
ENST00000496462 U2AF1-006 retained_intron Homo_sapiens 0 207
ENST00000594613 RP11-323I15.2-001 processed_pseudogene Homo_sapiens 0 673
ENST00000610664 U2AF1-003 protein_coding Homo_sapiens 0 1038
ENST00000619610 U2AF1-002 protein_coding Homo_sapiens 0 876
ENST00000620065 U2AF1-001 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000623375 U2AF1-005 protein_coding Homo_sapiens 0 977
ENST00000624739 U2AF1-004 retained_intron Homo_sapiens 0 846

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