C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear RNA auxiliary factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160201 U2AF1 9606 - 21:43092956-43107587 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291552 U2AF1-001 43092956-43107587 protein_coding
  ENST00000380276 U2AF1-002 43092956-43107565 protein_coding
  ENST00000398137 U2AF1-201 43092957-43107578 protein_coding
  ENST00000459639 U2AF1-004 43092956-43105252 protein_coding
  ENST00000463599 U2AF1-009 43095702-43104476 retained_intron
  ENST00000464750 U2AF1-003 43092956-43107524 nonsense_mediated_decay
  ENST00000468039 U2AF1-011 43100453-43101907 retained_intron
  ENST00000471250 U2AF1-008 43092956-43095943 retained_intron
  ENST00000475639 U2AF1-005 43092956-43107524 retained_intron
  ENST00000478282 U2AF1-007 43092956-43096390 retained_intron
  ENST00000486519 U2AF1-010 43093190-43107570 processed_transcript
  ENST00000496462 U2AF1-006 43097622-43107524 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000459639ENST00000471250ENST00000478282ENST00000496462
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000459639 N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A N/A 0.643±0.00 N/A 1.158±0.00 N/A N/A
ENST00000471250 N/A N/A 0.411±0.00 N/A N/A N/A 0.271±0.00 N/A 0.258±0.00 N/A N/A N/A N/A N/A
ENST00000478282 0.797±0.00 5.324±0.00 N/A 0.752±0.66 1.246±0.29 0.332±0.04 0.417±0.00 1.207±0.00 0.438±0.05 1.748±0.60 0.149±0.00 3.803±2.83 0.638±0.25 1.753±0.99
ENST00000496462 0.730±0.00 2.299±0.00 0.752±0.00 0.878±0.52 0.956±0.00 0.771±0.48 0.499±0.00 0.552±0.07 0.253±0.00 1.257±0.04 0.105±0.00 1.583±0.48 0.271±0.11 0.670±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MQ CIL_0000MQ_0002 CGP 21:43053191-43107587
CIL_0000P2 CIL_0000P2_0001 CGP 21:43092956-43172805

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015030 TAS Cajal body
GO:0016607 ISS nuclear speck
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0050733 IEA RS domain binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015325 u2af1 U2(RNU2) small nuclear RNA auxiliary factor 1 protein_coding Danio_rerio
ENSMUSG00000061613 U2af1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 protein_coding Mus_musculus

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