C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Alstrom syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063810 Alms1 10090 + 6:85587531-85702753 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072018 Alms1-001 85587531-85702753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072018 0.588±0.32 0.342±0.09 0.456±0.00 0.618±0.34 0.272±0.11 0.390±0.10 0.142±0.03 0.136±0.05 0.251±0.24 0.526±0.00 0.058±0.02 1.531±1.16 0.447±0.35 3.228±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EB CIL_0003EB_0002 CGP 6:85511131-85702753
CIL_0000LA CIL_0000LA_0002 CGP 6:85587531-85713205

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 IEA centriole
GO:0005929 IEA cilium
GO:0016197 IEA endosomal transport
GO:0051492 IEA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074779 ALMS1 Alstrom syndrome 1 protein_coding Danio_rerio
ENSG00000116127 ALMS1 Alstrom syndrome 1 protein_coding Homo_sapiens

Loading