C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003EB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135625-ENSG00000116127 CGP 9606 2:73290929-73610793
GeneTranscriptPositionBiotype
ENSG00000116127 (ALMS1)
Alstrom syndrome 1 		ENST00000423048 (ALMS1-003) 73451697-73573580 nonsense_mediated_decay
ENST00000464408 (ALMS1-007) 73600835-73608516 processed_transcript
ENST00000476650 (ALMS1-005) 73519945-73557260 processed_transcript
ENST00000484298 (ALMS1-002) 73385758-73609715 protein_coding
ENST00000490821 (ALMS1-006) 73603299-73610793 processed_transcript
ENST00000613296 (ALMS1-001) 73385758-73609919 protein_coding
ENST00000614410 (ALMS1-008) 73385869-73573577 protein_coding
ENST00000620466 (ALMS1-004) 73452725-73603859 retained_intron
ENSG00000135625 (EGR4)
early growth response 4 		ENST00000436467 (EGR4-001) 73290929-73293705 protein_coding
ENST00000545030 (EGR4-201) 73290930-73293701 protein_coding
ENSG00000214484 (AC074008.1)
 ENST00000437188 (AC074008.1-001) 73370019-73370892 processed_pseudogene
ENSG00000230002 (ALMS1-IT1)
ALMS1 intronic transcript 1 (non-protein coding) 		ENST00000441587 (ALMS1-IT1-001) 73456764-73459484 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003EB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071341-ENSMUSG00000063810 CGP 10090 6:85511131-85702753
GeneTranscriptPositionBiotype
ENSMUSG00000063810 (Alms1)
Alstrom syndrome 1 		ENSMUST00000072018 (Alms1-001) 85587531-85702753 protein_coding
ENSMUSG00000071341 (Egr4)
early growth response 4 		ENSMUST00000095759 (Egr4-201) 85511131-85513589 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EB_0001ENSG00000116127ENST00000423048ENST00000464408ENST00000476650ENST00000484298ENST00000490821ENST00000613296ENST00000614410ENST00000620466ENSG00000135625ENST00000436467ENST00000545030ENSG00000214484ENST00000437188ENSG00000230002ENST00000441587CIL_0003EB_0002ENSMUSG00000063810ENSMUST00000072018ENSMUSG00000071341ENSMUST00000095759
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EB_0001ENSG00000116127ENST00000423048ENST00000484298ENST00000613296ENST00000614410ENST00000620466ENSG00000135625ENST00000436467ENST00000545030ENSG00000214484ENST00000437188ENSG00000230002ENST00000441587CIL_0003EB_0002ENSMUSG00000063810ENSMUST00000072018ENSMUSG00000071341ENSMUST00000095759
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116127 ENST00000423048 0.954±0.00 0.358±0.00 1.142±0.00 1.666±0.95 2.377±0.00 0.999±0.52 0.639±0.49 0.709±0.16 2.654±0.00 1.482±1.00 0.459±0.00 1.310±0.75 0.284±0.09 10.248±4.01
ENST00000464408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484298 0.507±0.00 N/A 1.498±0.00 0.633±0.38 1.440±1.02 N/A 0.230±0.02 0.310±0.00 0.375±0.21 1.220±0.00 0.203±0.00 1.416±0.00 0.122±0.02 2.470±0.43
ENST00000490821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613296 N/A 0.502±0.00 N/A 0.180±0.00 0.134±0.00 0.878±0.00 0.120±0.00 N/A N/A 0.333±0.00 0.206±0.00 0.660±0.28 0.180±0.01 1.624±0.00
ENST00000614410 N/A N/A N/A 0.643±0.00 N/A N/A N/A 1.159±0.00 0.643±0.00 2.191±0.00 N/A N/A N/A 6.008±0.00
ENST00000620466 0.512±0.00 0.576±0.00 N/A N/A 0.309±0.00 0.339±0.00 0.195±0.00 0.516±0.00 0.245±0.00 0.604±0.00 N/A 2.249±0.61 0.561±0.30 8.161±3.58
ENSG00000135625 ENST00000436467 0.008±0.00 N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A 0.003±0.00 N/A 0.077±0.04 0.057±0.03 N/A
ENST00000545030 0.058±0.00 N/A N/A 0.782±0.42 N/A N/A N/A N/A N/A 0.014±0.00 N/A 0.289±0.30 0.058±0.03 3.896±1.13
ENSG00000214484 ENST00000437188 N/A 0.018±0.00 N/A 0.039±0.00 N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A 0.260±0.01
ENSG00000230002 ENST00000441587 0.503±0.00 0.150±0.00 0.295±0.00 0.434±0.23 0.493±0.36 0.189±0.10 0.150±0.10 0.074±0.01 0.652±0.51 0.697±0.36 0.278±0.14 0.503±0.13 0.102±0.05 0.812±0.39
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000063810 ENSMUST00000072018 0.588±0.32 0.342±0.09 0.456±0.00 0.618±0.34 0.272±0.11 0.390±0.10 0.142±0.03 0.136±0.05 0.251±0.24 0.526±0.00 0.058±0.02 1.531±1.16 0.447±0.35 3.228±0.81
ENSMUSG00000071341 ENSMUST00000095759 0.014±0.00 0.013±0.00 0.014±0.00 1.694±2.35 0.028±0.01 0.011±0.00 N/A N/A 0.004±0.00 0.009±0.00 N/A 0.081±0.03 0.021±0.01 2.158±0.00

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