C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000LA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116127-ENSG00000144035 CGP 9606 2:73385758-73642393
GeneTranscriptPositionBiotype
ENSG00000116127 (ALMS1)
Alstrom syndrome 1
ENST00000423048 (ALMS1-003) 73451697-73573580 nonsense_mediated_decay
ENST00000464408 (ALMS1-007) 73600835-73608516 processed_transcript
ENST00000476650 (ALMS1-005) 73519945-73557260 processed_transcript
ENST00000484298 (ALMS1-002) 73385758-73609715 protein_coding
ENST00000490821 (ALMS1-006) 73603299-73610793 processed_transcript
ENST00000613296 (ALMS1-001) 73385758-73609919 protein_coding
ENST00000614410 (ALMS1-008) 73385869-73573577 protein_coding
ENST00000620466 (ALMS1-004) 73452725-73603859 retained_intron
ENSG00000144035 (NAT8)
N-acetyltransferase 8 (GCN5-related, putative)
ENST00000272425 (NAT8-001) 73640832-73642393 protein_coding
ENSG00000230002 (ALMS1-IT1)
ALMS1 intronic transcript 1 (non-protein coding)
ENST00000441587 (ALMS1-IT1-001) 73456764-73459484 sense_intronic
CIL_0000LA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063810-ENSMUSG00000089694 CGP 10090 6:85587531-85713205
GeneTranscriptPositionBiotype
ENSMUSG00000063810 (Alms1)
Alstrom syndrome 1
ENSMUST00000072018 (Alms1-001) 85587531-85702753 protein_coding
ENSMUSG00000089694 (Gm4477)
predicted gene 4477
ENSMUST00000160534 (Gm4477-001) 85706727-85713205 protein_coding
ENSMUST00000179613 (Gm4477-201) 85707173-85707858 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LA_0001ENSG00000116127ENST00000423048ENST00000464408ENST00000476650ENST00000484298ENST00000490821ENST00000613296ENST00000614410ENST00000620466ENSG00000144035ENST00000272425ENSG00000230002ENST00000441587CIL_0000LA_0002ENSMUSG00000063810ENSMUST00000072018ENSMUSG00000089694ENSMUST00000160534ENSMUST00000179613
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LA_0001ENSG00000116127ENST00000423048ENST00000484298ENST00000613296ENST00000614410ENST00000620466ENSG00000144035ENST00000272425ENSG00000230002ENST00000441587CIL_0000LA_0002ENSMUSG00000063810ENSMUST00000072018ENSMUSG00000089694ENSMUST00000160534ENSMUST00000179613
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116127 ENST00000423048 0.954±0.00 0.358±0.00 1.142±0.00 1.666±0.95 2.377±0.00 0.999±0.52 0.639±0.49 0.709±0.16 2.654±0.00 1.482±1.00 0.459±0.00 1.310±0.75 0.284±0.09 10.248±4.01
ENST00000464408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484298 0.507±0.00 N/A 1.498±0.00 0.633±0.38 1.440±1.02 N/A 0.230±0.02 0.310±0.00 0.375±0.21 1.220±0.00 0.203±0.00 1.416±0.00 0.122±0.02 2.470±0.43
ENST00000490821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613296 N/A 0.502±0.00 N/A 0.180±0.00 0.134±0.00 0.878±0.00 0.120±0.00 N/A N/A 0.333±0.00 0.206±0.00 0.660±0.28 0.180±0.01 1.624±0.00
ENST00000614410 N/A N/A N/A 0.643±0.00 N/A N/A N/A 1.159±0.00 0.643±0.00 2.191±0.00 N/A N/A N/A 6.008±0.00
ENST00000620466 0.512±0.00 0.576±0.00 N/A N/A 0.309±0.00 0.339±0.00 0.195±0.00 0.516±0.00 0.245±0.00 0.604±0.00 N/A 2.249±0.61 0.561±0.30 8.161±3.58
ENSG00000144035 ENST00000272425 N/A 0.042±0.00 16.371±0.00 0.120±0.07 N/A 0.068±0.00 N/A 38.495±29.96 5.824±0.00 0.483±0.00 0.089±0.00 0.317±0.07 0.095±0.04 0.357±0.17
ENSG00000230002 ENST00000441587 0.503±0.00 0.150±0.00 0.295±0.00 0.434±0.23 0.493±0.36 0.189±0.10 0.150±0.10 0.074±0.01 0.652±0.51 0.697±0.36 0.278±0.14 0.503±0.13 0.102±0.05 0.812±0.39
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000063810 ENSMUST00000072018 0.588±0.32 0.342±0.09 0.456±0.00 0.618±0.34 0.272±0.11 0.390±0.10 0.142±0.03 0.136±0.05 0.251±0.24 0.526±0.00 0.058±0.02 1.531±1.16 0.447±0.35 3.228±0.81
ENSMUSG00000089694 ENSMUST00000160534 0.048±0.02 0.068±0.03 0.404±0.01 0.026±0.00 0.156±0.09 0.049±0.01 0.057±0.03 24.384±2.22 0.227±0.22 0.698±0.08 0.024±0.00 0.285±0.19 0.008±0.00 0.021±0.01
ENSMUST00000179613 0.059±0.00 0.130±0.10 0.598±0.00 0.157±0.00 0.153±0.00 0.042±0.00 N/A N/A 0.640±0.50 0.224±0.00 0.085±0.03 0.263±0.00 N/A 0.053±0.00

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