C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Alstrom syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116127 ALMS1 9606 + 2:73385758-73610793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000423048 ALMS1-003 73451697-73573580 nonsense_mediated_decay
  ENST00000464408 ALMS1-007 73600835-73608516 processed_transcript
  ENST00000476650 ALMS1-005 73519945-73557260 processed_transcript
  ENST00000484298 ALMS1-002 73385758-73609715 protein_coding
  ENST00000490821 ALMS1-006 73603299-73610793 processed_transcript
  ENST00000613296 ALMS1-001 73385758-73609919 protein_coding
  ENST00000614410 ALMS1-008 73385869-73573577 protein_coding
  ENST00000620466 ALMS1-004 73452725-73603859 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423048ENST00000484298ENST00000613296ENST00000614410ENST00000620466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423048 0.954±0.00 0.358±0.00 1.142±0.00 1.666±0.95 2.377±0.00 0.999±0.52 0.639±0.49 0.709±0.16 2.654±0.00 1.482±1.00 0.459±0.00 1.310±0.75 0.284±0.09 10.248±4.01
ENST00000484298 0.507±0.00 N/A 1.498±0.00 0.633±0.38 1.440±1.02 N/A 0.230±0.02 0.310±0.00 0.375±0.21 1.220±0.00 0.203±0.00 1.416±0.00 0.122±0.02 2.470±0.43
ENST00000613296 N/A 0.502±0.00 N/A 0.180±0.00 0.134±0.00 0.878±0.00 0.120±0.00 N/A N/A 0.333±0.00 0.206±0.00 0.660±0.28 0.180±0.01 1.624±0.00
ENST00000614410 N/A N/A N/A 0.643±0.00 N/A N/A N/A 1.159±0.00 0.643±0.00 2.191±0.00 N/A N/A N/A 6.008±0.00
ENST00000620466 0.512±0.00 0.576±0.00 N/A N/A 0.309±0.00 0.339±0.00 0.195±0.00 0.516±0.00 0.245±0.00 0.604±0.00 N/A 2.249±0.61 0.561±0.30 8.161±3.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EB CIL_0003EB_0001 CGP 2:73290929-73610793
CIL_0000LA CIL_0000LA_0001 CGP 2:73385758-73642393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005929 IEA cilium
GO:0016197 IEA endosomal transport
GO:0051492 IEA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074779 ALMS1 Alstrom syndrome 1 protein_coding Danio_rerio
ENSMUSG00000063810 Alms1 Alstrom syndrome 1 protein_coding Mus_musculus

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