C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM14 homolog A (SCD6, S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133046 Lsm14a-002 ENSMUSG00000066568 10090 - 7:34357451-34389080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000133046
Transcript ID Breast
ENSMUST00000133046 8.131±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003690 IDA double-stranded DNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0039529 IGI RIG-I signaling pathway
GO:0051607 IMP defense response to virus
GO:0060340 IDA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000433627 LSM14A-003 protein_coding Homo_sapiens 0 540
ENST00000450182 AC010492.2-001 processed_pseudogene Homo_sapiens 5e-40 169
ENST00000540746 LSM14A-002 protein_coding Homo_sapiens 0 407
ENST00000544216 LSM14A-001 protein_coding Homo_sapiens 0 540
ENST00000570386 LSM14A-003 retained_intron Homo_sapiens 0.000000000004 79
ENST00000570462 LSM14A-002 protein_coding Homo_sapiens 0 540
ENST00000575697 LSM14A-005 protein_coding Homo_sapiens 0 614
ENST00000575811 LSM14A-001 protein_coding Homo_sapiens 0 540
ENST00000586157 LSM14A-004 protein_coding Homo_sapiens 0 614
ENST00000588582 LSM14A-005 retained_intron Homo_sapiens 0.000000000004 79
ENST00000610736 AC010492.2-001 processed_pseudogene Homo_sapiens 2.99878e-43 180
ENST00000613015 XXbac-BPG111L9.8-001 processed_pseudogene Homo_sapiens 1.99993e-41 174
ENST00000618764 XXbac-BCX105G6.12-001 processed_pseudogene Homo_sapiens 7e-40 169

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