C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM14 homolog A (SCD6, S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085585 Lsm14a-001 ENSMUSG00000066568 10090 - 7:34344646-34389540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085585 21.352±4.60 15.150±7.62 25.235±0.08 19.327±7.47 12.195±3.72 17.968±2.22 12.465±1.11 16.426±2.09 12.606±8.11 23.562±3.42 22.607±0.77 28.846±8.22 24.401±7.20 8.807±3.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003690 IDA double-stranded DNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005737 ISS cytoplasm
GO:0006417 IEA regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0010494 ISS cytoplasmic stress granule
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0039529 IGI RIG-I signaling pathway
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0051607 IMP defense response to virus
GO:0060340 IDA positive regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279068 LSM14B-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000279069 LSM14B-002 protein_coding Homo_sapiens 6.02558e-44 182
ENST00000370915 LSM14B-005 protein_coding Homo_sapiens 7.9874e-44 182
ENST00000400318 LSM14B-003 protein_coding Homo_sapiens 4.99997e-41 172
ENST00000403062 RP11-129H15.4-001 processed_pseudogene Homo_sapiens 0 1031
ENST00000433627 LSM14A-003 protein_coding Homo_sapiens 0 2920
ENST00000450182 AC010492.2-001 processed_pseudogene Homo_sapiens 0 939
ENST00000540746 LSM14A-002 protein_coding Homo_sapiens 0 1873
ENST00000544216 LSM14A-001 protein_coding Homo_sapiens 0 1832
ENST00000570386 LSM14A-003 retained_intron Homo_sapiens 0 1188
ENST00000570462 LSM14A-002 protein_coding Homo_sapiens 0 2660
ENST00000575110 LSM14A-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000575388 LSM14A-006 protein_coding Homo_sapiens 0.000000000000001 88
ENST00000575697 LSM14A-005 protein_coding Homo_sapiens 0 717
ENST00000575811 LSM14A-001 protein_coding Homo_sapiens 0 1832
ENST00000586157 LSM14A-004 protein_coding Homo_sapiens 0 717
ENST00000588582 LSM14A-005 retained_intron Homo_sapiens 0 1188
ENST00000589878 LSM14A-006 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000590416 LSM14A-008 retained_intron Homo_sapiens 0 599
ENST00000610736 AC010492.2-001 processed_pseudogene Homo_sapiens 0 939
ENST00000613015 XXbac-BPG111L9.8-001 processed_pseudogene Homo_sapiens 0 569
ENST00000618764 XXbac-BCX105G6.12-001 processed_pseudogene Homo_sapiens 0 562
ENST00000623285 LSM14A-007 retained_intron Homo_sapiens 0 599

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