C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067148 Polr1c 10090 - 17:46243920-46248054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087026 Polr1c-001 46243920-46248054 protein_coding
  ENSMUST00000124126 Polr1c-002 46247299-46247968 retained_intron
  ENSMUST00000124655 Polr1c-005 46244101-46246573 protein_coding
  ENSMUST00000142706 Polr1c-004 46244613-46247968 protein_coding
  ENSMUST00000152583 Polr1c-003 46244524-46247932 retained_intron
  ENSMUST00000173232 Polr1c-007 46244933-46247968 nonsense_mediated_decay
  ENSMUST00000173349 Polr1c-008 46244835-46247968 protein_coding
  ENSMUST00000174392 Polr1c-006 46245262-46247967 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087026ENSMUST00000124655ENSMUST00000142706ENSMUST00000152583ENSMUST00000173232ENSMUST00000174392
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087026 15.389±4.47 13.094±0.00 30.742±4.54 32.457±17.93 8.748±1.78 10.855±0.60 6.836±1.70 24.715±4.28 21.483±13.60 14.342±0.90 6.052±0.43 17.803±10.72 21.088±9.98 27.820±8.51
ENSMUST00000124655 9.009±0.00 N/A N/A N/A 3.861±0.29 6.046±0.07 3.537±0.58 N/A 6.630±5.02 7.559±0.00 N/A 11.529±2.69 13.466±8.24 N/A
ENSMUST00000142706 N/A N/A N/A N/A 4.930±1.27 7.697±2.26 2.640±0.00 10.758±1.67 4.143±0.63 5.417±0.00 N/A 13.458±0.00 9.055±0.00 N/A
ENSMUST00000152583 10.472±0.45 14.482±0.00 N/A N/A 7.988±3.30 8.494±0.24 2.414±0.00 11.244±3.47 N/A 7.233±1.77 N/A 22.639±4.54 N/A N/A
ENSMUST00000173232 N/A N/A N/A 15.561±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 20.226±9.87 19.530±0.00
ENSMUST00000174392 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.960±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_0005N0 CIL_0005N0_0002 CGP 17:46243920-46252537

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0008150 ND biological_process
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039400 polr1c polymerase (RNA) I polypeptide C protein_coding Danio_rerio
ENSG00000171453 POLR1C polymerase (RNA) I polypeptide C, 30kDa protein_coding Homo_sapiens

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