C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide C, 30kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171453 POLR1C 9606 + 6:43509702-43529585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304004 POLR1C-006 43517089-43529585 protein_coding
  ENST00000372344 POLR1C-005 43517088-43521506 protein_coding
  ENST00000372389 POLR1C-008 43517022-43521526 protein_coding
  ENST00000423780 POLR1C-007 43517112-43520312 protein_coding
  ENST00000428025 POLR1C-009 43509702-43520310 protein_coding
  ENST00000455605 POLR1C-010 43517133-43521494 retained_intron
  ENST00000481352 POLR1C-004 43517054-43521479 retained_intron
  ENST00000488601 POLR1C-001 43517098-43520703 retained_intron
  ENST00000512472 POLR1C-002 43517083-43519733 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304004ENST00000372344ENST00000372389ENST00000423780ENST00000428025ENST00000455605ENST00000481352ENST00000488601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304004 N/A N/A N/A N/A 2.144±0.30 2.170±0.00 0.755±0.00 1.737±1.20 N/A 1.820±0.00 N/A N/A N/A N/A
ENST00000372344 N/A 7.635±0.00 0.950±0.00 1.596±0.08 1.710±0.00 4.526±0.00 0.608±0.00 3.019±0.00 2.184±0.00 N/A 0.944±0.77 33.734±0.00 9.342±0.00 13.082±4.89
ENST00000372389 3.433±0.00 7.953±0.00 N/A 1.890±0.00 3.403±0.00 1.862±0.00 2.911±0.00 6.848±0.00 3.790±0.00 N/A 3.005±0.00 11.978±5.67 6.927±4.08 12.370±0.00
ENST00000423780 N/A N/A 5.171±0.00 3.166±0.00 N/A 6.754±0.00 N/A N/A 11.066±0.00 N/A 0.742±0.00 9.222±0.00 N/A N/A
ENST00000428025 N/A N/A N/A 6.131±0.00 7.305±0.00 7.970±0.00 1.544±0.00 4.505±0.00 N/A 1.253±0.00 1.100±0.00 24.051±14.21 11.975±0.00 36.418±0.00
ENST00000455605 N/A 3.292±0.00 N/A 0.733±0.00 0.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481352 N/A N/A N/A 0.811±0.00 0.932±0.00 0.809±0.00 N/A 1.107±0.00 0.773±0.00 N/A N/A N/A N/A N/A
ENST00000488601 1.129±0.00 N/A 2.259±0.00 N/A N/A N/A N/A N/A N/A 0.526±0.00 N/A 2.260±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 IEA:TAS DNA-directed RNA polymerase activity
GO:0005654 TAS nucleoplasm
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 TAS DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039400 polr1c polymerase (RNA) I polypeptide C protein_coding Danio_rerio
ENSMUSG00000067148 Polr1c polymerase (RNA) I polypeptide C protein_coding Mus_musculus

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