C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087026 Polr1c-001 ENSMUSG00000067148 10090 - 17:46243920-46248054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087026 15.389±4.47 13.094±0.00 30.742±4.54 32.457±17.93 8.748±1.78 10.855±0.60 6.836±1.70 24.715±4.28 21.483±13.60 14.342±0.90 6.052±0.43 17.803±10.72 21.088±9.98 27.820±8.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_0005N0 CIL_0005N0_0002 CGP 17:46243920-46252537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0008150 ND biological_process
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304004 POLR1C-006 protein_coding Homo_sapiens 0 1007
ENST00000372344 POLR1C-005 protein_coding Homo_sapiens 0 717
ENST00000372389 POLR1C-008 protein_coding Homo_sapiens 0 1151
ENST00000423780 POLR1C-007 protein_coding Homo_sapiens 0 431
ENST00000428025 POLR1C-009 protein_coding Homo_sapiens 0 486
ENST00000455605 POLR1C-010 retained_intron Homo_sapiens 0 407
ENST00000481352 POLR1C-004 retained_intron Homo_sapiens 0 446
ENST00000488601 POLR1C-001 retained_intron Homo_sapiens 0 446
ENST00000512472 POLR1C-002 retained_intron Homo_sapiens 0 305

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