C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067158 Col4a4 10090 - 1:82448423-82586849 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087050 Col4a4-001 82448423-82586849 protein_coding
  ENSMUST00000135271 Col4a4-002 82538527-82586792 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087050ENSMUST00000135271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087050 0.847±0.46 1.255±0.52 0.444±0.18 0.069±0.04 0.332±0.13 0.124±0.01 0.687±0.19 18.219±2.06 0.059±0.03 13.906±2.43 0.241±0.07 5.005±1.55 0.313±0.42 2.539±0.77
ENSMUST00000135271 N/A 2.713±0.91 N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AH CIL_0004AH_0003 CGP 1:82316452-82586849
CIL_0004AI CIL_0004AI_0003 CGP 1:82448423-82722059

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IPI extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0005605 ISS basal lamina
GO:0032836 IMP glomerular basement membrane development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002831 col4a4 collagen, type IV, alpha 4 protein_coding Danio_rerio
ENSG00000081052 COL4A4 collagen, type IV, alpha 4 protein_coding Homo_sapiens

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