C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087050 Col4a4-001 ENSMUSG00000067158 10090 - 1:82448423-82586849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087050 0.847±0.46 1.255±0.52 0.444±0.18 0.069±0.04 0.332±0.13 0.124±0.01 0.687±0.19 18.219±2.06 0.059±0.03 13.906±2.43 0.241±0.07 5.005±1.55 0.313±0.42 2.539±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AH CIL_0004AH_0003 CGP 1:82316452-82586849
CIL_0004AI CIL_0004AI_0003 CGP 1:82448423-82722059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IPI extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0005605 ISS basal lamina
GO:0032836 IMP glomerular basement membrane development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396625 COL4A4-001 protein_coding Homo_sapiens 0 4043

Loading