C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor receptor superfamily, member 13c
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068105 Tnfrsf13c 10090 - 15:82221744-82224339 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089161 Tnfrsf13c-201 82221744-82224336 protein_coding
  ENSMUST00000109535 Tnfrsf13c-202 82221745-82224339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089161ENSMUST00000109535
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089161 0.110±0.04 0.067±0.02 N/A N/A 9.650±5.40 0.776±0.28 0.192±0.12 0.370±0.35 0.270±0.27 0.831±0.20 0.333±0.44 0.108±0.04 0.046±0.03 N/A
ENSMUST00000109535 0.040±0.03 N/A 0.027±0.00 0.011±0.00 4.841±0.06 0.254±0.03 0.028±0.00 0.105±0.07 0.086±0.06 0.399±0.10 0.051±0.00 0.136±0.04 N/A 3.220±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BF CIL_0004BF_0002 CGP 15:82206952-82224339
CIL_0004BG CIL_0004BG_0002 CGP 15:82221744-82244747

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001782 IMP B cell homeostasis
GO:0002636 IMP positive regulation of germinal center formation
GO:0009897 IDA external side of plasma membrane
GO:0016021 ISO integral component of membrane
GO:0030890 IDA positive regulation of B cell proliferation
GO:0031295 IDA T cell costimulation
GO:0031296 IDA B cell costimulation
GO:0042102 IDA positive regulation of T cell proliferation
GO:0045078 IMP positive regulation of interferon-gamma biosynthetic process
GO:0050776 IMP regulation of immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000159958 TNFRSF13C tumor necrosis factor receptor superfamily, member 13C protein_coding Homo_sapiens

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