C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin related modifier 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069020 Urm1 10090 + 2:29820075-29845002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091142 Urm1-001 29827342-29845002 protein_coding
  ENSMUST00000123021 Urm1-006 29841648-29844064 retained_intron
  ENSMUST00000130542 Urm1-005 29827395-29833636 retained_intron
  ENSMUST00000147325 Urm1-003 29827361-29843421 processed_transcript
  ENSMUST00000149379 Urm1-004 29820075-29843145 processed_transcript
  ENSMUST00000156944 Urm1-002 29827342-29843374 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091142ENSMUST00000123021ENSMUST00000147325ENSMUST00000149379ENSMUST00000156944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091142 5.253±0.97 3.752±1.70 10.720±2.15 7.881±3.54 5.004±1.26 5.026±1.66 4.996±1.35 5.799±1.34 6.181±3.60 5.690±1.70 3.611±1.35 5.404±2.23 6.822±3.28 2.186±1.29
ENSMUST00000123021 2.313±0.49 2.311±0.33 2.120±0.68 2.127±1.02 2.312±0.27 2.056±0.60 1.216±0.13 1.506±0.25 1.770±0.64 1.760±0.23 N/A 2.945±1.09 2.429±0.61 0.662±0.54
ENSMUST00000147325 N/A 6.252±0.83 5.245±0.00 N/A N/A 3.952±0.00 5.300±0.00 5.914±1.00 3.326±0.21 6.156±0.51 4.028±0.52 N/A 6.862±2.62 N/A
ENSMUST00000149379 N/A N/A N/A 9.304±0.00 N/A N/A N/A N/A N/A N/A N/A 11.340±0.00 12.362±2.53 N/A
ENSMUST00000156944 12.168±0.44 18.610±3.38 N/A 8.557±0.00 14.795±3.70 13.901±4.13 N/A 10.290±0.57 8.735±1.56 9.738±2.46 N/A 17.993±3.98 14.692±3.11 5.923±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EA CIL_0007EA_0002 CGP 2:29802634-29845002
CIL_0000ST CIL_0000ST_0003 CGP 2:29820075-29882840

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002098 ISS tRNA wobble uridine modification
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0016783 IEA sulfurtransferase activity
GO:0032447 IEA protein urmylation
GO:0034227 ISS tRNA thio-modification
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091198 urm1 ubiquitin related modifier 1 protein_coding Danio_rerio
ENSG00000167118 URM1 ubiquitin related modifier 1 protein_coding Homo_sapiens

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