C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin related modifier 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167118 URM1 9606 + 9:128371319-128392016 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372847 URM1-004 128371371-128388411 protein_coding
  ENST00000372850 URM1-002 128371361-128390734 protein_coding
  ENST00000372853 URM1-001 128371319-128390734 protein_coding
  ENST00000452446 URM1-201 128371381-128392016 protein_coding
  ENST00000470840 URM1-005 128371361-128390090 nonsense_mediated_decay
  ENST00000483206 URM1-003 128378067-128389869 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372847ENST00000372853ENST00000452446ENST00000470840ENST00000483206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372847 N/A N/A N/A N/A N/A 0.734±0.00 0.349±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000372853 25.856±0.00 40.781±0.00 1.647±0.00 12.628±8.79 18.742±17.12 14.816±13.41 4.941±3.46 5.609±3.88 3.743±1.68 2.368±0.00 8.596±1.57 22.769±12.21 35.260±4.55 30.817±4.13
ENST00000452446 N/A 3.038±0.00 N/A 0.715±0.00 N/A N/A N/A 1.854±0.00 N/A 0.195±0.00 N/A 1.274±0.88 N/A N/A
ENST00000470840 11.848±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.724±0.00 N/A N/A
ENST00000483206 N/A N/A N/A N/A 1.558±0.00 N/A N/A 0.898±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EA CIL_0007EA_0001 CGP 9:128340646-128392016
CIL_0000ST CIL_0000ST_0002 CGP 9:128371319-128437351

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002098 IMP tRNA wobble uridine modification
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IC cytosol
GO:0016783 IDA sulfurtransferase activity
GO:0032447 IEA protein urmylation
GO:0034227 IMP:IEA tRNA thio-modification
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091198 urm1 ubiquitin related modifier 1 protein_coding Danio_rerio
ENSMUSG00000069020 Urm1 ubiquitin related modifier 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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