C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin related modifier 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091142 Urm1-001 ENSMUSG00000069020 10090 + 2:29827342-29845002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091142 5.253±0.97 3.752±1.70 10.720±2.15 7.881±3.54 5.004±1.26 5.026±1.66 4.996±1.35 5.799±1.34 6.181±3.60 5.690±1.70 3.611±1.35 5.404±2.23 6.822±3.28 2.186±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EA CIL_0007EA_0002 CGP 2:29802634-29845002
CIL_0000ST CIL_0000ST_0003 CGP 2:29820075-29882840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002098 ISS tRNA wobble uridine modification
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0016783 IEA sulfurtransferase activity
GO:0032447 IEA protein urmylation
GO:0034227 ISS tRNA thio-modification
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372847 URM1-004 protein_coding Homo_sapiens 6.02558e-44 182
ENST00000372850 URM1-002 protein_coding Homo_sapiens 0 453
ENST00000372853 URM1-001 protein_coding Homo_sapiens 0 773
ENST00000452446 URM1-201 protein_coding Homo_sapiens 0 453
ENST00000470840 URM1-005 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000483206 URM1-003 processed_transcript Homo_sapiens 0 219

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