C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sp140 nuclear body protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070031 Sp140 10090 + 1:85600378-85645037 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080204 Sp140-001 85600703-85645037 protein_coding
  ENSMUST00000113385 Sp140-002 85600378-85610782 nonsense_mediated_decay
  ENSMUST00000159234 Sp140-005 85635384-85642890 processed_transcript
  ENSMUST00000160119 Sp140-006 85642989-85645032 retained_intron
  ENSMUST00000161497 Sp140-004 85632478-85644942 protein_coding
  ENSMUST00000162925 Sp140-003 85610833-85630539 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080204ENSMUST00000160119ENSMUST00000161497ENSMUST00000162925
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080204 0.705±0.22 0.518±0.18 8.464±3.30 0.201±0.08 2.676±0.49 0.596±0.22 0.228±0.05 0.588±0.00 1.230±0.85 1.746±0.33 0.279±0.33 0.885±0.68 0.541±0.33 0.051±0.02
ENSMUST00000160119 2.849±0.27 2.298±0.26 N/A N/A 6.467±2.06 1.542±0.38 0.470±0.26 0.752±0.21 0.816±0.48 3.854±1.21 0.216±0.07 1.497±0.99 N/A 0.195±0.10
ENSMUST00000161497 N/A N/A N/A 0.589±0.00 N/A N/A 0.593±0.17 0.676±0.00 N/A N/A 0.168±0.00 0.917±0.29 N/A 0.096±0.06
ENSMUST00000162925 N/A 4.302±2.55 4.486±0.37 3.978±1.85 N/A N/A 0.710±0.30 1.030±0.19 2.229±0.76 N/A 0.539±0.19 4.044±2.40 2.120±1.21 0.152±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0008 CGP 1:85576899-85645037
CIL_0004AU CIL_0004AU_0007 CGP 1:85600378-85709998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000079263 SP140 SP140 nuclear body protein protein_coding Homo_sapiens

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