C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp140 nuclear body protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160119 Sp140-006 ENSMUSG00000070031 10090 + 1:85642989-85645032 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000160119
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000160119 2.849±0.27 2.298±0.26 6.467±2.06 1.542±0.38 0.470±0.26 0.752±0.21 0.816±0.48 3.854±1.21 0.216±0.07 1.497±0.99 0.195±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0008 CGP 1:85576899-85645037
CIL_0004AU CIL_0004AU_0007 CGP 1:85600378-85709998

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243810 SP140L-201 protein_coding Homo_sapiens 9e-37 159
ENST00000343805 SP140-009 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000392045 SP140-002 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000396563 SP140L-202 protein_coding Homo_sapiens 9e-37 159
ENST00000415673 SP140L-009 protein_coding Homo_sapiens 1e-36 159
ENST00000417495 SP140-004 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000420434 SP140-201 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000483728 SP140L-002 retained_intron Homo_sapiens 1e-36 159
ENST00000497212 SP140L-007 retained_intron Homo_sapiens 5e-35 152

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