C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp140 nuclear body protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080204 Sp140-001 ENSMUSG00000070031 10090 + 1:85600703-85645037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080204 0.705±0.22 0.518±0.18 8.464±3.30 0.201±0.08 2.676±0.49 0.596±0.22 0.228±0.05 0.588±0.00 1.230±0.85 1.746±0.33 0.279±0.33 0.885±0.68 0.541±0.33 0.051±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0008 CGP 1:85576899-85645037
CIL_0004AU CIL_0004AU_0007 CGP 1:85600378-85709998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243810 SP140L-201 protein_coding Homo_sapiens 0 405
ENST00000343805 SP140-009 protein_coding Homo_sapiens 0 433
ENST00000392045 SP140-002 protein_coding Homo_sapiens 0 433
ENST00000396563 SP140L-202 protein_coding Homo_sapiens 0 383
ENST00000415673 SP140L-009 protein_coding Homo_sapiens 0 405
ENST00000417495 SP140-004 protein_coding Homo_sapiens 0 433
ENST00000420434 SP140-201 protein_coding Homo_sapiens 0 433
ENST00000479539 SP140-005 retained_intron Homo_sapiens 7e-32 141
ENST00000483728 SP140L-002 retained_intron Homo_sapiens 0 239
ENST00000497212 SP140L-007 retained_intron Homo_sapiens 5e-35 152

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