C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of microtubule dynamics 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094695 Rmdn3-001 ENSMUSG00000070730 10090 - 2:119137001-119157034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094695
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094695 18.906±3.35 15.286±7.38 12.542±1.17 11.502±3.28 13.610±4.40 13.063±5.06 4.989±0.65 15.417±0.44 19.945±4.06 10.715±0.54 1.563±0.47 6.305±2.95 34.023±10.64 5.293±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0003 CGP 2:119112793-119157034
CIL_00070C CIL_00070C_0002 CGP 2:119137001-119172390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 ISS mitochondrial outer membrane
GO:0005874 IEA microtubule
GO:0006874 ISS cellular calcium ion homeostasis
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260385 RMDN3-001 protein_coding Homo_sapiens 0 1417
ENST00000338376 RMDN3-003 protein_coding Homo_sapiens 0 1421
ENST00000558232 RMDN3-012 protein_coding Homo_sapiens 0 691
ENST00000558364 RMDN3-009 processed_transcript Homo_sapiens 0 370
ENST00000558560 RMDN3-010 processed_transcript Homo_sapiens 0 442
ENST00000558777 RMDN3-004 nonsense_mediated_decay Homo_sapiens 0 1219
ENST00000560460 RMDN3-008 protein_coding Homo_sapiens 0 429
ENST00000560588 RMDN3-005 retained_intron Homo_sapiens 0 490
ENST00000560779 RMDN3-011 retained_intron Homo_sapiens 0 488
ENST00000560905 RMDN3-007 protein_coding Homo_sapiens 0 845

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