C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Yip1 domain family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095263 Yipf3-001 ENSMUSG00000071074 10090 + 17:46248080-46252537 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095263 18.504±5.90 55.151±20.21 20.814±0.95 12.713±6.83 19.636±7.95 49.204±17.62 9.002±2.04 20.446±3.30 14.949±6.09 38.251±10.58 2.891±0.82 35.027±15.67 7.396±0.46 8.434±4.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_0005N0 CIL_0005N0_0002 CGP 17:46243920-46252537
CIL_0002NT CIL_0002NT_0002 CGP 17:46248080-46257316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030133 IEA transport vesicle
GO:0030154 IEA cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372417 YIPF3-006 retained_intron Homo_sapiens 0 438
ENST00000372422 YIPF3-003 protein_coding Homo_sapiens 0 1423
ENST00000416380 YIPF3-004 nonsense_mediated_decay Homo_sapiens 0 885
ENST00000455768 YIPF3-005 nonsense_mediated_decay Homo_sapiens 0 832
ENST00000460547 YIPF3-009 nonsense_mediated_decay Homo_sapiens 2e-16 92
ENST00000460903 YIPF3-002 retained_intron Homo_sapiens 0 508
ENST00000488966 YIPF3-008 retained_intron Homo_sapiens 0 255
ENST00000490447 YIPF3-014 nonsense_mediated_decay Homo_sapiens 0 1199
ENST00000500090 YIPF3-017 protein_coding Homo_sapiens 0 257
ENST00000502714 YIPF3-016 retained_intron Homo_sapiens 0 462
ENST00000503972 YIPF3-020 protein_coding Homo_sapiens 0 680
ENST00000506469 YIPF3-012 protein_coding Homo_sapiens 0 1332
ENST00000510102 YIPF3-001 nonsense_mediated_decay Homo_sapiens 0 1223
ENST00000511831 YIPF3-018 protein_coding Homo_sapiens 0 448
ENST00000514627 YIPF3-019 retained_intron Homo_sapiens 2.00386e-43 180

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