C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cat eye syndrome chromosome region, candidate 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071226 Cecr2 10090 + 6:120666369-120771190 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100993 Cecr2-002 120666582-120766904 protein_coding
  ENSMUST00000112686 Cecr2-001 120666421-120771190 protein_coding
  ENSMUST00000124634 Cecr2-006 120734558-120756674 processed_transcript
  ENSMUST00000129803 Cecr2-005 120734625-120755548 protein_coding
  ENSMUST00000135109 Cecr2-004 120666535-120724748 processed_transcript
  ENSMUST00000143563 Cecr2-007 120758135-120761717 protein_coding
  ENSMUST00000148346 Cecr2-003 120666369-120724920 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100993ENSMUST00000112686ENSMUST00000143563
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100993 0.773±0.25 1.011±0.17 0.320±0.00 0.730±0.06 2.750±0.27 0.096±0.05 1.235±0.29 1.075±0.31 1.352±0.46 1.935±0.33 0.515±0.09 1.406±0.49 3.099±2.81 6.551±1.92
ENSMUST00000112686 0.639±0.00 0.598±0.16 0.410±0.06 0.532±0.19 0.991±0.34 0.070±0.03 0.324±0.00 0.571±0.29 1.283±0.81 0.889±0.27 0.732±0.51 0.322±0.04 0.953±0.70 1.694±0.61
ENSMUST00000143563 N/A 0.867±0.11 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A 1.065±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E1 CIL_0002E1_0002 CGP 6:120666369-120793982

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001842 IMP neural fold formation
GO:0001843 IMP neural tube closure
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0007338 IMP single fertilization
GO:0021915 IMP neural tube development
GO:0031010 IPI ISWI-type complex
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0060122 IMP inner ear receptor stereocilium organization
GO:0090102 IMP cochlea development
GO:0090537 IEA CERF complex
GO:0097194 IEA execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078310 CECR2 cat eye syndrome chromosome region, candidate 2 protein_coding Danio_rerio
ENSG00000099954 CECR2 cat eye syndrome chromosome region, candidate 2 protein_coding Homo_sapiens

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