C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cat eye syndrome chromosome region, candidate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100993 Cecr2-002 ENSMUSG00000071226 10090 + 6:120666582-120766904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100993 0.773±0.25 1.011±0.17 0.320±0.00 0.730±0.06 2.750±0.27 0.096±0.05 1.235±0.29 1.075±0.31 1.352±0.46 1.935±0.33 0.515±0.09 1.406±0.49 3.099±2.81 6.551±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E1 CIL_0002E1_0002 CGP 6:120666369-120793982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001842 IMP neural fold formation
GO:0001843 IMP neural tube closure
GO:0003674 ND molecular_function
GO:0005719 IDA nuclear euchromatin
GO:0007338 IMP single fertilization
GO:0021915 IMP neural tube development
GO:0031010 IPI ISWI-type complex
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0060122 IMP inner ear receptor stereocilium organization
GO:0090102 IMP cochlea development
GO:0090537 IEA CERF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262608 CECR2-201 protein_coding Homo_sapiens 0 1775
ENST00000342247 CECR2-202 protein_coding Homo_sapiens 0 1775
ENST00000355219 CECR2-004 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000400585 CECR2-002 protein_coding Homo_sapiens 0 2093
ENST00000497534 CECR2-003 processed_transcript Homo_sapiens 0 405
ENST00000612582 CECR2-001 protein_coding Homo_sapiens 0 2091

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