C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cat eye syndrome chromosome region, candidate 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099954 CECR2 9606 + 22:17359949-17558149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262608 CECR2-201 17369784-17554145 protein_coding
  ENST00000342247 CECR2-202 17369366-17554145 protein_coding
  ENST00000355219 CECR2-004 17548999-17554133 nonsense_mediated_decay
  ENST00000400585 CECR2-002 17359949-17553332 protein_coding
  ENST00000497534 CECR2-003 17428273-17499458 processed_transcript
  ENST00000612582 CECR2-001 17477093-17558149 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000262608ENST00000342247ENST00000355219ENST00000400585ENST00000612582
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000262608 N/A N/A 0.104±0.00 0.019±0.00 N/A N/A N/A 0.198±0.00 0.672±0.00 0.104±0.00 N/A 1.104±0.00
ENST00000342247 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000355219 N/A 0.460±0.00 N/A 0.093±0.00 N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A
ENST00000400585 N/A N/A N/A 0.083±0.02 0.104±0.00 N/A N/A 0.121±0.00 N/A N/A N/A N/A
ENST00000612582 0.171±0.00 N/A 0.541±0.00 0.022±0.00 0.031±0.00 0.979±0.00 0.609±0.00 0.867±0.00 0.655±0.43 0.142±0.03 0.119±0.02 1.528±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E1 CIL_0002E1_0001 CGP 22:17359949-17590994

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000910 NAS cytokinesis
GO:0001842 IEA neural fold formation
GO:0001843 IEA neural tube closure
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0006309 TAS apoptotic DNA fragmentation
GO:0007010 NAS cytoskeleton organization
GO:0007338 IEA single fertilization
GO:0016192 NAS vesicle-mediated transport
GO:0021915 IEA neural tube development
GO:0031010 IEA ISWI-type complex
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0090102 IEA cochlea development
GO:0090537 IDA CERF complex
GO:0097194 IDA execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078310 CECR2 cat eye syndrome chromosome region, candidate 2 protein_coding Danio_rerio
ENSMUSG00000071226 Cecr2 cat eye syndrome chromosome region, candidate 2 protein_coding Mus_musculus

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