C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cat eye syndrome chromosome region, candidate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112686 Cecr2-001 ENSMUSG00000071226 10090 + 6:120666421-120771190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112686 0.639±0.00 0.598±0.16 0.410±0.06 0.532±0.19 0.991±0.34 0.070±0.03 0.324±0.00 0.571±0.29 1.283±0.81 0.889±0.27 0.732±0.51 0.322±0.04 0.953±0.70 1.694±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E1 CIL_0002E1_0002 CGP 6:120666369-120793982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001842 IMP neural fold formation
GO:0001843 IMP neural tube closure
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0007338 IMP single fertilization
GO:0021915 IMP neural tube development
GO:0031010 IPI ISWI-type complex
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0060122 IMP inner ear receptor stereocilium organization
GO:0090102 IMP cochlea development
GO:0090537 IEA CERF complex
GO:0097194 IEA execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262608 CECR2-201 protein_coding Homo_sapiens 0 1775
ENST00000342247 CECR2-202 protein_coding Homo_sapiens 0 1775
ENST00000355219 CECR2-004 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000400585 CECR2-002 protein_coding Homo_sapiens 0 1927
ENST00000497534 CECR2-003 processed_transcript Homo_sapiens 0 405
ENST00000612582 CECR2-001 protein_coding Homo_sapiens 0 1925

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