C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SFT2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073468 Sft2d1 10090 + 17:8311102-8396852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000128087 Sft2d1-009 8324386-8327440 retained_intron
  ENSMUST00000130782 Sft2d1-004 8311122-8327055 nonsense_mediated_decay
  ENSMUST00000135627 Sft2d1-006 8311139-8327008 processed_transcript
  ENSMUST00000135964 Sft2d1-008 8320548-8327062 retained_intron
  ENSMUST00000140890 Sft2d1-010 8311109-8396852 processed_transcript
  ENSMUST00000141213 Sft2d1-005 8311175-8318208 retained_intron
  ENSMUST00000145276 Sft2d1-002 8311169-8327440 nonsense_mediated_decay
  ENSMUST00000150728 Sft2d1-003 8311102-8327442 retained_intron
  ENSMUST00000153406 Sft2d1-007 8318729-8324463 retained_intron
  ENSMUST00000154553 Sft2d1-001 8311102-8327442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128087ENSMUST00000135627ENSMUST00000145276ENSMUST00000150728ENSMUST00000153406ENSMUST00000154553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128087 N/A 14.650±5.46 N/A N/A 16.429±0.00 19.980±5.22 N/A N/A N/A N/A N/A 29.460±0.00 N/A N/A
ENSMUST00000135627 N/A N/A N/A 22.947±12.81 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145276 N/A 8.877±1.14 N/A 20.794±8.74 9.196±0.00 10.822±0.00 N/A N/A N/A N/A N/A N/A N/A 4.479±0.53
ENSMUST00000150728 2.677±0.29 2.184±0.09 8.392±0.06 8.182±5.37 4.376±0.86 4.614±0.48 1.496±0.22 N/A 2.809±0.25 4.121±0.54 0.489±0.33 4.156±1.69 1.931±0.74 1.177±0.36
ENSMUST00000153406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.827±0.25 10.004±0.00 17.952±3.92 N/A
ENSMUST00000154553 20.339±2.41 22.522±9.20 47.147±7.31 10.586±1.89 30.113±11.79 36.683±8.04 7.921±1.89 30.398±2.54 35.034±11.33 39.238±5.76 1.491±0.52 30.905±7.40 28.352±19.82 11.875±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FQ CIL_0004FQ_0002 CGP 17:8311102-8396852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007362 sft2d1 SFT2 domain containing 1 protein_coding Danio_rerio
ENSG00000198818 SFT2D1 SFT2 domain containing 1 protein_coding Homo_sapiens

Loading