C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074513 Arfip1 10090 - 3:84496093-85887516 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000098990 Arfip1-001 84496093-84582534 protein_coding
  ENSMUST00000107687 Arfip1-002 84497204-84582485 protein_coding
  ENSMUST00000143514 Arfip1-003 84497736-84582625 protein_coding
  ENSMUST00000146862 Arfip1-005 85817123-85887368 retained_intron
  ENSMUST00000154148 Arfip1-004 84496426-85887516 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098990ENSMUST00000143514ENSMUST00000146862ENSMUST00000154148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098990 N/A N/A 9.643±1.49 5.469±1.61 1.961±0.00 N/A 2.584±0.62 N/A 2.749±0.93 N/A 3.711±0.99 8.924±5.93 10.917±2.35 1.336±0.60
ENSMUST00000143514 4.698±1.21 4.595±1.21 9.191±0.00 3.731±0.00 6.932±1.26 7.298±1.58 1.477±0.20 5.439±0.00 1.688±0.00 6.036±1.03 N/A 7.028±4.53 20.400±13.30 N/A
ENSMUST00000146862 N/A 5.826±1.18 N/A N/A 18.456±7.41 10.932±3.90 10.509±0.82 N/A 5.159±0.75 N/A N/A N/A N/A N/A
ENSMUST00000154148 0.988±0.00 2.357±0.00 N/A N/A 2.268±0.48 3.238±1.14 0.978±0.11 N/A N/A N/A 1.543±0.21 1.631±0.03 N/A 0.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064N CIL_00064N_0002 CGP 3:84444035-85887516
CIL_0004PH CIL_0004PH_0002 CGP 3:84496093-85887516

Gene Ontology
GO IDEvidence TypeGO Description
GO:0019904 IEA protein domain specific binding
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070055 arfip1 ADP-ribosylation factor interacting protein 1 (arfaptin 1) protein_coding Danio_rerio
ENSG00000164144 ARFIP1 ADP-ribosylation factor interacting protein 1 protein_coding Homo_sapiens

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