C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin tyrosine ligase-like family, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074673 Ttll9 10090 + 2:152962485-153008482 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099197 Ttll9-001 152962485-153007340 protein_coding
  ENSMUST00000103155 Ttll9-002 152962506-153003230 protein_coding
  ENSMUST00000109801 Ttll9-010 152962511-153006971 nonsense_mediated_decay
  ENSMUST00000146626 Ttll9-008 152962506-153003186 nonsense_mediated_decay
  ENSMUST00000150218 Ttll9-006 153002781-153008482 retained_intron
  ENSMUST00000151641 Ttll9-005 152989459-152999325 retained_intron
  ENSMUST00000152158 Ttll9-007 152962506-153003179 nonsense_mediated_decay
  ENSMUST00000155631 Ttll9-003 152973568-152984321 protein_coding
  ENSMUST00000165343 Ttll9-009 152972288-153007340 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099197ENSMUST00000103155ENSMUST00000109801ENSMUST00000146626ENSMUST00000150218ENSMUST00000151641ENSMUST00000152158ENSMUST00000155631ENSMUST00000165343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099197 0.054±0.03 N/A 0.009±0.00 0.657±0.17 N/A N/A N/A 0.175±0.06 0.061±0.02 0.522±0.23 N/A 0.781±0.35 N/A 77.278±33.71
ENSMUST00000103155 N/A N/A N/A 0.312±0.00 N/A N/A N/A 0.080±0.00 N/A 0.402±0.04 N/A 0.640±0.21 N/A 30.741±0.00
ENSMUST00000109801 N/A N/A N/A N/A 0.170±0.00 N/A 0.026±0.00 N/A 0.039±0.00 0.479±0.00 N/A N/A N/A N/A
ENSMUST00000146626 0.088±0.00 N/A 0.012±0.00 0.432±0.10 N/A N/A 0.155±0.00 N/A 0.055±0.02 N/A 0.028±0.00 0.777±0.00 N/A 13.107±0.00
ENSMUST00000150218 0.033±0.01 0.136±0.08 0.035±0.00 0.499±0.03 0.046±0.01 0.047±0.02 0.034±0.00 0.045±0.01 0.045±0.03 N/A 0.021±0.01 0.248±0.03 0.025±0.01 N/A
ENSMUST00000151641 0.172±0.08 N/A N/A N/A N/A N/A N/A 0.219±0.00 0.095±0.04 N/A N/A N/A N/A N/A
ENSMUST00000152158 N/A N/A N/A N/A N/A N/A 0.132±0.00 0.080±0.00 N/A N/A N/A N/A N/A 9.162±0.00
ENSMUST00000155631 N/A N/A N/A N/A N/A N/A N/A 0.558±0.06 N/A N/A 0.136±0.00 2.184±0.89 0.203±0.00 N/A
ENSMUST00000165343 N/A 0.176±0.00 0.013±0.00 0.716±0.00 0.066±0.03 N/A 0.294±0.00 0.292±0.12 0.038±0.01 0.680±0.06 0.025±0.00 0.769±0.33 0.006±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001AB CIL_0001AB_0002 CGP 2:152940997-153008482
CIL_0001KI CIL_0001KI_0002 CGP 2:152962485-153015427

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005929 IEA cilium
GO:0006464 IEA cellular protein modification process
GO:0008150 ND biological_process
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062806 ttll9 tubulin tyrosine ligase-like family, member 9 protein_coding Danio_rerio
ENSG00000131044 TTLL9 tubulin tyrosine ligase-like family, member 9 protein_coding Homo_sapiens

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