C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin tyrosine ligase-like family, member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099197 Ttll9-001 ENSMUSG00000074673 10090 + 2:152962485-153007340 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverLungOvaryTestisENSMUST00000099197
Transcript ID Adipose Bladder Brain Kidney Liver Lung Ovary Testis
ENSMUST00000099197 0.054±0.03 0.009±0.00 0.657±0.17 0.175±0.06 0.061±0.02 0.522±0.23 0.781±0.35 77.278±33.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001AB CIL_0001AB_0002 CGP 2:152940997-153008482
CIL_0001KI CIL_0001KI_0002 CGP 2:152962485-153015427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005929 IEA cilium
GO:0006464 IEA cellular protein modification process
GO:0008150 ND biological_process
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310998 TTLL9-004 nonsense_mediated_decay Homo_sapiens 0 551
ENST00000375921 TTLL9-002 nonsense_mediated_decay Homo_sapiens 0 625
ENST00000375922 TTLL9-003 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000375934 TTLL9-006 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000375938 TTLL9-001 protein_coding Homo_sapiens 0 623
ENST00000535842 TTLL9-201 protein_coding Homo_sapiens 0 623
ENST00000611624 TTLL9-007 nonsense_mediated_decay Homo_sapiens 0 1541
ENST00000616761 TTLL9-009 nonsense_mediated_decay Homo_sapiens 0 1541
ENST00000620043 TTLL9-005 protein_coding Homo_sapiens 2e-38 165

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