C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin tyrosine ligase-like family, member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109801 Ttll9-010 ENSMUSG00000074673 10090 + 2:152962511-153006971 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverLungENSMUST00000109801
Transcript ID Breast Heart Liver Lung
ENSMUST00000109801 0.170±0.00 0.026±0.00 0.039±0.00 0.479±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001AB CIL_0001AB_0002 CGP 2:152940997-153008482
CIL_0001KI CIL_0001KI_0002 CGP 2:152962485-153015427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006464 IEA cellular protein modification process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310998 TTLL9-004 nonsense_mediated_decay Homo_sapiens 0 551
ENST00000375921 TTLL9-002 nonsense_mediated_decay Homo_sapiens 0 1194
ENST00000375922 TTLL9-003 nonsense_mediated_decay Homo_sapiens 0 773
ENST00000375934 TTLL9-006 nonsense_mediated_decay Homo_sapiens 0 1397
ENST00000375938 TTLL9-001 protein_coding Homo_sapiens 0 778
ENST00000535842 TTLL9-201 protein_coding Homo_sapiens 0 778
ENST00000611624 TTLL9-007 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000616761 TTLL9-009 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000620043 TTLL9-005 protein_coding Homo_sapiens 2e-38 165

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