C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4, sodium bicarbonate transporter-like, member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074796 Slc4a11 10090 - 2:130684113-130697519 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099362 Slc4a11-001 130684113-130697519 protein_coding
  ENSMUST00000127397 Slc4a11-005 130691549-130697469 protein_coding
  ENSMUST00000134647 Slc4a11-002 130686577-130697469 retained_intron
  ENSMUST00000138028 Slc4a11-004 130690833-130691982 retained_intron
  ENSMUST00000144945 Slc4a11-003 130684113-130688565 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099362ENSMUST00000134647ENSMUST00000138028ENSMUST00000144945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099362 1.751±0.85 1.762±0.39 0.211±0.02 0.413±0.04 1.090±0.47 0.379±0.20 0.065±0.02 11.923±1.15 0.109±0.05 0.320±0.11 0.049±0.00 3.202±1.09 1.707±1.22 0.326±0.17
ENSMUST00000134647 N/A N/A N/A 0.072±0.00 0.230±0.00 0.098±0.01 N/A N/A 0.034±0.00 0.115±0.00 0.026±0.01 0.740±0.41 N/A 0.025±0.00
ENSMUST00000138028 N/A N/A N/A 1.087±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A
ENSMUST00000144945 0.594±0.00 N/A 0.071±0.02 0.279±0.00 0.356±0.14 0.096±0.01 0.078±0.00 2.236±0.00 0.035±0.00 0.138±0.00 0.045±0.02 0.588±0.00 0.456±0.37 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000065 CIL_000065_0002 CGP 2:130667610-130697519
CIL_000340 CIL_000340_0002 CGP 2:130684113-130906406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IEA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0015106 IEA bicarbonate transmembrane transporter activity
GO:0015252 IEA hydrogen ion channel activity
GO:0015293 IEA symporter activity
GO:0015701 IEA bicarbonate transport
GO:0015992 IEA proton transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030003 IEA cellular cation homeostasis
GO:0035445 IEA borate transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042044 IMP fluid transport
GO:0046713 IEA borate transport
GO:0046715 IEA borate transmembrane transporter activity
GO:0046983 ISS protein dimerization activity
GO:0050801 IMP ion homeostasis
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075532 slc4a11 solute carrier family 4, sodium borate transporter, member 11 protein_coding Danio_rerio
ENSG00000088836 SLC4A11 solute carrier family 4, sodium borate transporter, member 11 protein_coding Homo_sapiens

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