C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4, sodium borate transporter, member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088836 SLC4A11 9606 - 20:3227417-3239190 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380056 SLC4A11-002 3227417-3237727 protein_coding
  ENST00000380059 SLC4A11-001 3227417-3238166 protein_coding
  ENST00000437836 SLC4A11-007 3234235-3238713 protein_coding
  ENST00000470631 SLC4A11-004 3229671-3230560 processed_transcript
  ENST00000474451 SLC4A11-006 3227498-3239190 nonsense_mediated_decay
  ENST00000488544 SLC4A11-005 3228928-3229776 processed_transcript
  ENST00000539553 SLC4A11-003 3227636-3239190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380056ENST00000380059ENST00000474451ENST00000539553
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380056 N/A N/A N/A 0.763±0.00 N/A 0.472±0.00 N/A 0.981±0.31 0.122±0.00 0.536±0.00
ENST00000380059 0.331±0.17 N/A N/A 1.276±0.00 N/A N/A N/A N/A N/A 0.952±0.14
ENST00000474451 N/A N/A 0.124±0.00 2.563±0.00 0.014±0.00 1.297±0.00 0.737±0.00 N/A 0.015±0.00 N/A
ENST00000539553 0.463±0.00 0.040±0.00 N/A 2.404±0.00 0.013±0.00 0.228±0.00 0.982±0.00 0.548±0.30 0.125±0.04 1.230±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000065 CIL_000065_0001 CGP 20:3208868-3239190
CIL_000340 CIL_000340_0001 CGP 20:3227417-3407625

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005272 IDA sodium channel activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0006810 IEA transport
GO:0006814 IDA sodium ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015106 IDA bicarbonate transmembrane transporter activity
GO:0015252 IDA hydrogen ion channel activity
GO:0015293 IEA symporter activity
GO:0015701 IDA bicarbonate transport
GO:0015992 IDA proton transport
GO:0016021 IEA integral component of membrane
GO:0016323 TAS basolateral plasma membrane
GO:0030003 IDA cellular cation homeostasis
GO:0035445 IDA borate transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0042044 ISS fluid transport
GO:0046713 IDA borate transport
GO:0046715 IDA borate transmembrane transporter activity
GO:0046983 IDA protein dimerization activity
GO:0050801 IEA ion homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075532 slc4a11 solute carrier family 4, sodium borate transporter, member 11 protein_coding Danio_rerio
ENSMUSG00000074796 Slc4a11 solute carrier family 4, sodium bicarbonate transporter-like, member 11 protein_coding Mus_musculus

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