C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4, sodium bicarbonate transporter-like, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099362 Slc4a11-001 ENSMUSG00000074796 10090 - 2:130684113-130697519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099362 1.751±0.85 1.762±0.39 0.211±0.02 0.413±0.04 1.090±0.47 0.379±0.20 0.065±0.02 11.923±1.15 0.109±0.05 0.320±0.11 0.049±0.00 3.202±1.09 1.707±1.22 0.326±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000065 CIL_000065_0002 CGP 2:130667610-130697519
CIL_000340 CIL_000340_0002 CGP 2:130684113-130906406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IEA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0015106 IEA bicarbonate transmembrane transporter activity
GO:0015252 IEA hydrogen ion channel activity
GO:0015293 IEA symporter activity
GO:0015701 IEA bicarbonate transport
GO:0015992 IEA proton transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030003 IEA cellular cation homeostasis
GO:0035445 IEA borate transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042044 IMP fluid transport
GO:0046713 IEA borate transport
GO:0046715 IEA borate transmembrane transporter activity
GO:0046983 ISS protein dimerization activity
GO:0050801 IMP ion homeostasis
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380056 SLC4A11-002 protein_coding Homo_sapiens 0 2486
ENST00000380059 SLC4A11-001 protein_coding Homo_sapiens 0 2486
ENST00000470631 SLC4A11-004 processed_transcript Homo_sapiens 4e-29 132
ENST00000474451 SLC4A11-006 nonsense_mediated_decay Homo_sapiens 0 1323
ENST00000488544 SLC4A11-005 processed_transcript Homo_sapiens 0 274
ENST00000539553 SLC4A11-003 protein_coding Homo_sapiens 0 2486

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