C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly (A) polymerase beta (testis specific)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099400 Papolb-001 ENSMUSG00000074817 10090 - 5:142525838-142530076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099400 0.071±0.04 0.055±0.02 0.023±0.00 0.114±0.06 0.065±0.05 0.039±0.01 0.032±0.01 0.030±0.02 0.010±0.01 0.133±0.03 0.008±0.00 0.063±0.04 0.049±0.03 91.265±31.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MG CIL_0002MG_0002 CGP 5:142463931-142551098
CIL_0002MD CIL_0002MD_0002 CGP 5:142484839-142551098
CIL_0002ME CIL_0002ME_0002 CGP 5:142525838-142608800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IBA polynucleotide adenylyltransferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IPI endoplasmic reticulum
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0043631 ISA RNA polyadenylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216277 PAPOLA-001 protein_coding Homo_sapiens 0 2023
ENST00000392990 PAPOLA-005 protein_coding Homo_sapiens 0 2054
ENST00000404991 PAPOLB-001 protein_coding Homo_sapiens 0 2180
ENST00000553357 PAPOLA-011 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000553461 PAPOLA-025 protein_coding Homo_sapiens 0 728
ENST00000553689 PAPOLA-003 nonsense_mediated_decay Homo_sapiens 0 1570
ENST00000554130 PAPOLA-012 processed_transcript Homo_sapiens 0 348
ENST00000554666 PAPOLA-026 retained_intron Homo_sapiens 0 580
ENST00000554887 PAPOLA-010 processed_transcript Homo_sapiens 0 337
ENST00000555021 PAPOLA-016 retained_intron Homo_sapiens 0 265
ENST00000555131 PAPOLA-015 retained_intron Homo_sapiens 0 361
ENST00000555224 PAPOLA-024 retained_intron Homo_sapiens 0 527
ENST00000555626 PAPOLA-006 protein_coding Homo_sapiens 0 2010
ENST00000555701 PAPOLA-009 retained_intron Homo_sapiens 0 300
ENST00000555912 PAPOLA-007 retained_intron Homo_sapiens 0 211
ENST00000556248 PAPOLA-014 processed_transcript Homo_sapiens 4.00001e-40 169
ENST00000556283 PAPOLA-018 retained_intron Homo_sapiens 0 579
ENST00000556619 PAPOLA-013 protein_coding Homo_sapiens 6e-23 111
ENST00000556787 PAPOLA-017 retained_intron Homo_sapiens 0 520
ENST00000557320 PAPOLA-002 protein_coding Homo_sapiens 0 928
ENST00000557406 PAPOLA-023 retained_intron Homo_sapiens 0 211
ENST00000557471 PAPOLA-004 protein_coding Homo_sapiens 0 612

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